Talks
Keynote
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We are what we index; a primer for the Wheeler Graph era
Talk
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Recursive Parsing and Grammar Compression in the Era of Pangenomics
Talk
Proceedings
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An Efficient Data Structure and Algorithm for Long-MatchQuery in Run-Length Compressed BWT
Ahsan Sanaullah, Degui Zhi, Shaojie Zhang
Talk
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Design of Worst-Case-Optimal Spaced Seeds
Talk
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Haplotype-aware long-read error correction
Parvesh Barak, Daniel Gibney, Chirag Jain
Talk
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Human readable compression of GFA paths using grammar-basedcode
Talk
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Average-Tree Phylogenetic Diversity of Networks
Leo van Iersel, Mark Jones, Jannik Schestag, , Mathias Weller
Talk
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Partitioned Multi-MUM finding for scalable pangenomics
Vikram Shivakumar, Ben Langmead
Talk
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K-mer-based estimators of the substitution rate ofrepetitive sequences
Haonan Wu, Antonio Blanca, Paul Medvedev
Talk
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Dolphyin: A Combinatorial Algorithm for Identifying1-Dollo Phylogenies in Cancer
Daniel Feng, Mohammed El-Kebir
Talk
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Fast pseudoalignment queries on compressed colored deBruijn graphs
Alessio Campanelli, Giulio Ermanno Pibiri, Rob Patro
Talk
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Graph-Based Extension of Partial Atom Maps: TheoreticalUniqueness and Practical Algorithms
Marcos E. González Laffitte, Tieu-Long Phan,
Talk
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Estimation of substitution and indel rates via k-merstatistics
Mahmudur Rahman Hera, Paul Medvedev, David Koslicki, Antonio Blanca
Talk
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Spark: sparsified hierarchical energy minimization of RNApseudoknots
Mateo Gray, Sebastian Will, Hosna Jabbari
Talk
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Identifying Breakpoint Median Genomes: A BranchingAlgorithm Approach
Poly H. da Silva, Arash Jamshidpey, David Sankoff
Talk
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Improved Algorithms for Bi-partition Function Computation
John Bridgers, Jan Hoinka, S. Cenk Sahinalp, Salem Malikic, Teresa Przytycka, A. Funda Ergun
Talk
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Which Phylogenetic Networks are Level-k Networks withAdditional Arcs? Structure and Algorithms
Takatora Suzuki, Momoko Hayamizu
Talk
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Linear-space Subquadratic-time String Alignment Algorithmfor Arbitrary Scoring Matrices
Ryosuke Yamano, Tetsuo Shibuya
Talk
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Mutational signature refitting on sparse pan-cancer data
Gal Gilad, Teresa Przytycka, Roded Sharan
Talk
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DiVerG: Scalable Distance Index for Validation ofPaired-End Alignments in Sequence Graphs
Ali Ghaffaari, Alexander Schönhuth, Tobias Marschall
Talk
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Lossless Pangenome Indexing Using Tag Arrays
Parsa Eskandar, Benedict Paten, Jouni Sirén
Talk
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Sequence similarity estimation by random subsequencesketching
Ke Chen, Vinamratha Pattar, Mingfu Shao
Talk
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Approximability of Longest Run Subsequence andComplementary Minimization Problems
Yuichi Asahiro, Mingyang Gong, Jesper Jansson, Guohui Lin, Sichen Lu, Eiji Miyano, Hirotaka Ono, Toshiki Saitoh, Shunichi Tanaka
Talk